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R

random() - Method in class upsimulator.recognizer.UPLanguageParser.PositionResultContext
 
random() - Method in class upsimulator.recognizer.UPLanguageParser
 
RandomContext(ParserRuleContext, int) - Constructor for class upsimulator.recognizer.UPLanguageParser.RandomContext
 
ready() - Method in class upsimulator.recognizer.actions.MembraneExtendAction
 
ready() - Method in class upsimulator.recognizer.actions.RecognizerAction
Check if this action is ready to execute
ready() - Method in class upsimulator.recognizer.actions.RuleSetDeclareAction
 
ready() - Method in class upsimulator.recognizer.actions.RuleTunnelChecker
 
ready() - Method in class upsimulator.recognizer.actions.TunnelCreateAction
 
RecognizerAction - Class in upsimulator.recognizer.actions
Actions that need to be delayed, will be done after the document recognize has been finished.
RecognizerAction() - Constructor for class upsimulator.recognizer.actions.RecognizerAction
 
reduceDelay() - Method in class upsimulator.rules.results.DelayedResult
 
reduceObject(Obj, Number) - Method in class upsimulator.core.PMembrane
 
reduceObject(Obj, Number) - Method in interface upsimulator.interfaces.Membrane
Reduce object in this membrane
regCondition() - Method in class upsimulator.recognizer.UPLanguageParser.PruleContext
 
regCondition() - Method in class upsimulator.recognizer.UPLanguageParser
 
RegConditionContext(ParserRuleContext, int) - Constructor for class upsimulator.recognizer.UPLanguageParser.RegConditionContext
 
registMemClass(String, Membrane, boolean) - Static method in interface upsimulator.interfaces.Membrane
Register a Membrane Class
registRuleSet(String, List<Rule>) - Static method in interface upsimulator.interfaces.Rule
Register a rule set
RegularExpressionCondition - Class in upsimulator.rules.conditions
 
RegularExpressionCondition(String) - Constructor for class upsimulator.rules.conditions.RegularExpressionCondition
 
remove(int) - Method in class upsimulator.gui.UPLFileListModel
 
removeListener(MembraneListener) - Method in class upsimulator.core.PMembrane
 
removeListener(MembraneListener) - Method in interface upsimulator.interfaces.Membrane
Remove a listener from this membrane
removeTunnel(Tunnel) - Method in interface upsimulator.interfaces.Membrane
Remove a tunnel from this membranes.
Result - Interface in upsimulator.interfaces
 
result(Object, Object) - Static method in class upsimulator.interfaces.UPSLogger
 
result() - Method in class upsimulator.recognizer.UPLanguageParser.PruleContext
 
result(int) - Method in class upsimulator.recognizer.UPLanguageParser.PruleContext
 
result() - Method in class upsimulator.recognizer.UPLanguageParser
 
ResultContext(ParserRuleContext, int) - Constructor for class upsimulator.recognizer.UPLanguageParser.ResultContext
 
resultLog(Object, Object) - Method in class upsimulator.gui.MainWindow
 
resultLog(Object, Object) - Method in class upsimulator.interfaces.UPSLogger
Log results
Rule - Interface in upsimulator.interfaces
A general implementation of Rule
RULE_abcDim - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_additionalResults - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_all - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_andOpt - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_boolCondition - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_condition - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_delayedResult - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_environmentDef - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_formulaDim - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_go - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_here - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_in - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_inhibitorCondition - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_intDim - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_membraneDef - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_membraneName - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_membraneType - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_memCreateResult - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_memDissolveResult - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_memDivisionResult - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_objAssign - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_objCondition - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_objConditionWithTarget - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_objects - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_objName - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_objNum - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_objResult - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_orOpt - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_out - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_positionResult - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_priority - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_priorityCondition - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_probabilisticCondition - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_promoterCondition - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_properties - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_propertyCondition - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_propertyInit - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_propertyName - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_propertyResult - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_propertyValue - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_prule - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_random - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_regCondition - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_result - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_ruleName - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_ruleSetDeclare - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_ruleSetDef - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_ruleSetNamePrefix - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_ruleSetType - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_start - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_submembrane - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_target - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_tunnels - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RULE_tunnelTarget - Static variable in class upsimulator.recognizer.UPLanguageParser
 
RuleChecker - Class in upsimulator.speedup
Speed up checking rule's satisfaction
RuleChecker(Rule, List<Long[]>, Membrane) - Constructor for class upsimulator.speedup.RuleChecker
 
ruleName() - Method in class upsimulator.recognizer.UPLanguageParser.PruleContext
 
ruleName() - Method in class upsimulator.recognizer.UPLanguageParser
 
RuleNameContext(ParserRuleContext, int) - Constructor for class upsimulator.recognizer.UPLanguageParser.RuleNameContext
 
ruleNames - Static variable in class upsimulator.recognizer.UPLanguageLexer
 
ruleNames - Static variable in class upsimulator.recognizer.UPLanguageParser
 
ruleSet - Static variable in interface upsimulator.interfaces.Rule
 
ruleSetDeclare() - Method in class upsimulator.recognizer.UPLanguageParser.EnvironmentDefContext
 
ruleSetDeclare(int) - Method in class upsimulator.recognizer.UPLanguageParser.EnvironmentDefContext
 
ruleSetDeclare() - Method in class upsimulator.recognizer.UPLanguageParser.MembraneDefContext
 
ruleSetDeclare(int) - Method in class upsimulator.recognizer.UPLanguageParser.MembraneDefContext
 
ruleSetDeclare() - Method in class upsimulator.recognizer.UPLanguageParser
 
ruleSetDeclare() - Method in class upsimulator.recognizer.UPLanguageParser.SubmembraneContext
 
ruleSetDeclare(int) - Method in class upsimulator.recognizer.UPLanguageParser.SubmembraneContext
 
RuleSetDeclareAction - Class in upsimulator.recognizer.actions
Add a set of rule to one membrane
RuleSetDeclareAction(String, String, Membrane) - Constructor for class upsimulator.recognizer.actions.RuleSetDeclareAction
 
RuleSetDeclareContext(ParserRuleContext, int) - Constructor for class upsimulator.recognizer.UPLanguageParser.RuleSetDeclareContext
 
ruleSetDef() - Method in class upsimulator.recognizer.UPLanguageParser
 
ruleSetDef() - Method in class upsimulator.recognizer.UPLanguageParser.StartContext
 
ruleSetDef(int) - Method in class upsimulator.recognizer.UPLanguageParser.StartContext
 
RuleSetDefContext(ParserRuleContext, int) - Constructor for class upsimulator.recognizer.UPLanguageParser.RuleSetDefContext
 
ruleSetNamePrefix() - Method in class upsimulator.recognizer.UPLanguageParser.RuleSetDeclareContext
 
ruleSetNamePrefix() - Method in class upsimulator.recognizer.UPLanguageParser
 
RuleSetNamePrefixContext(ParserRuleContext, int) - Constructor for class upsimulator.recognizer.UPLanguageParser.RuleSetNamePrefixContext
 
ruleSetType() - Method in class upsimulator.recognizer.UPLanguageParser.RuleSetDeclareContext
 
ruleSetType() - Method in class upsimulator.recognizer.UPLanguageParser.RuleSetDefContext
 
ruleSetType() - Method in class upsimulator.recognizer.UPLanguageParser
 
RuleSetTypeContext(ParserRuleContext, int) - Constructor for class upsimulator.recognizer.UPLanguageParser.RuleSetTypeContext
 
RuleTunnelChecker - Class in upsimulator.recognizer.actions
Check if every Target in PositionResult has defined its tunnel in current membrane
RuleTunnelChecker(String, Rule, Membrane) - Constructor for class upsimulator.recognizer.actions.RuleTunnelChecker
 
run() - Method in class upsimulator.core.PController
 
run() - Method in class upsimulator.speedup.Worker
 
runSteps(int) - Method in class upsimulator.core.PController
Simulate the environment with steps specified
runToStop() - Method in class upsimulator.core.PController
Simulate till no rules can be used.
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